PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Araip.RW92I
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
Family B3
Protein Properties Length: 239aa    MW: 27356 Da    PI: 10.0976
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Araip.RW92IgenomeNCGR_PGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B353.44.6e-17140229198
                  EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS
           B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98 
                  f+k++++s+v+   +l l+ +f+++h  +  ++  +tl de+g ++e  +  rk++    l++GW++F  a++L +gD +vF+l++r++f  +v ++r
  Araip.RW92I 140 FVKTMLQSHVTGGFWLGLSVQFCKTHLPN--RDERITLIDEDGDEYETLYLARKTG----LSAGWRGFSIAHNLVDGDALVFELISRTTF--KVYIVR 229
                  89************************533..5557***************656665....*************************98888..777776 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.102.8E-21133230IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.88E-24133231IPR015300DNA-binding pseudobarrel domain
CDDcd100178.81E-27138229No hitNo description
PfamPF023623.6E-14140229IPR003340B3 DNA binding domain
PROSITE profilePS5086312.069140231IPR003340B3 DNA binding domain
SMARTSM010196.1E-24140231IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 239 aa     Download sequence    Send to blast
MTAKASEYEE IRRKRLEENK KRMEALNLPN LSQALHTSPL SKSKSHSPSP LKRVKSRTIE  60
KQVVVVRRSS RVANMPAPVY KEVVIDRVVT PRSRRYGGSY DRYRDYSKRV YASDEARQEA  120
LDKADKIQSD LQSKSHHPSF VKTMLQSHVT GGFWLGLSVQ FCKTHLPNRD ERITLIDEDG  180
DEYETLYLAR KTGLSAGWRG FSIAHNLVDG DALVFELISR TTFKVYIVRV NSPAEGEEQ
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016174093.11e-178PREDICTED: B3 domain-containing protein At5g42700
SwissprotQ9FMZ46e-74Y5270_ARATH; B3 domain-containing protein At5g42700
TrEMBLA0A0B2P5H61e-112A0A0B2P5H6_GLYSO; B3 domain-containing protein
TrEMBLI1JTI31e-112I1JTI3_SOYBN; Uncharacterized protein
STRINGGLYMA04G04030.11e-111(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF33363168
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G42700.16e-68B3 family protein